Publications, Experience & Achievements
Research Project codes on Github (some are private)
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A lightweight python package for image reconstruction in a STORM-based super-resolution microscope
(code link)
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An adaptive image thresholding method for SMLM images (published in Optics and Lasers in Engineering)
(code link)
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A CNN based method for unmixing clustered PSFs in SMLM images (published in Journal of Microscopy).
(code link)
An extention implementing a
custom UNET-based model
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A deep deep learning based method for predicting aberrations in terms of Zernike polynomials
to be used in a Shack-Hartman type wavefront sensor (published in IEEE Sensors Journal)
(code link)
An extended
RESNET-based model
for estimating higher Zernike modes for GAWS.
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A python based method for lateral drift correction in SMLM images during acquisition (work manuscript
under preparation)
(code link)
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A Micromanager plugin for real-time localization and visualization of super-resolved images. It runs a custom
Python script in the background to localize the molecules in real time
(code link)
Here is the fully java based plugin
which can acquire and process the SMLM images and display the reconstructed image in real time.
Conference Presentations
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[Poster] Structure Estimation in Single Molecule Localization Microscopy Using Parametric and Deep Learning Methods - OPTICA Fio-LS 2025, Denver USA
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[Oral] Astigmatic Vortex Beam-Based Autofocus System for Super Resolution Microscopy - OPTICA-SPIE ECBO 2025, Munich Germany
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[Poster] Implementation of Real-Time Image Reconstruction and Visualization in Single Molecule Localization Microscopy - OPTICA-SPIE ECBO 2025, Munich Germany
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[Oral] Convolutional Neural Network in Localization based Super-Resolution Optical Microscopy - PANE 2024, Tezpur University
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[Oral] Image reconstruction modalities in a single molecule
localization microscope - LIGHT seminar 2024, Imperial
College London
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[Poster] Role of Gaussian Fitting in the image reconstruction in a
STORM based super resolution microscope - PHOTONICS 2023,
IISC Bangalore
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[Poster] A python program for image reconstruction in a STORM based
super resolution microscope - RIC 2023, IIT Guwahati
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[Oral] Image reconstruction in a STORM based super resolution
microscope - NCETP 2021, Tezpur University
Peer reviewer
- Journal of Optics (IOP)
- Engineering Research Express (IOP)
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Frontiers of Information Technology & Electronic Engineering
(Springer)
- Measurement Science and Technology (IOP)
- Nature Communications (Nature)
- Machine Learning Science and Technology (IOP)
- Scientific Reports (Nature)
Scientific Community membership
Programming Languages & Platforms
